July 2009 Archives by subject

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Starting: Wed Jul 1 02:13:17 EDT 2009
Ending: Fri Jul 31 17:59:54 EDT 2009
Messages: 218

• [Biopython-dev] [Bioperl-l] FASTQ support in Biopython, BioPerl, and EMBOSS   Peter
• [Biopython-dev] [Biopython] Bio.Sequencing.Ace   David WInter
• [Biopython-dev] [Biopython] next-gen sequencing software   Jose Blanca
• [Biopython-dev] [Biopython] next-gen sequencing software   Peter
• [Biopython-dev] [Biopython] Restriction enzyme digestion gels   Jose Blanca
• [Biopython-dev] [Bug 2704] Parser for the markx10 alignment format   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2788] Bio.Nexus.Trees newick parser does not support internal node labels   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2788] Bio.Nexus.Trees newick parser does not support internal node labels   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2820] Convert test_PDB.py to unittest   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2865] Phd writer class for SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2865] Phd writer class for SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2865] Phd writer class for SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2865] Phd writer class for SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2865] Phd writer class for SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2867] Bio.PDB.PDBList.update_pdb calls invalid os.cmd   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2867] Bio.PDB.PDBList.update_pdb calls invalid os.cmd   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2867] New: Bio.PDB.PDBList.update_pdb calls invalid os.cmd   João Rodrigues
• [Biopython-dev] [Bug 2872] Genbank parser breaks on VectorNTI generated genbank file   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2872] Genbank parser breaks on VectorNTI generated genbank file   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2872] Genbank parser breaks on VectorNTI generated genbank file   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2872] Genbank parser breaks on VectorNTI generated genbank file   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2872] Genbank parser breaks on VectorNTI generated genbank file   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2872] Genbank parser breaks on VectorNTI generated genbank file   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2872] Genbank parser breaks on VectorNTI generated genbank file   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2872] New: Genbank parser breaks on VectorNTI generated genbank file   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2873] import warnings.warn instead of warnings causes code to fail   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2873] New: import warnings.warn instead of warnings causes code to fail   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2874] invalid class on warning module   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2874] invalid class on warning module   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2874] New: invalid class on warning module   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2879] missing __delitem__ in Bio.PDB.Entity.Entity   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2879] missing __delitem__ in Bio.PDB.Entity.Entity   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2879] missing __delitem__ in Bio.PDB.Entity.Entity   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2879] New: missing __delitem__ in Bio.PDB.Entity.Entity   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2880] New: Two unit tests issues in 1.51b (t-coffee and mafft)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2880] test_Mafft_tool.py unit test failure   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2880] test_Mafft_tool.py unit test failure   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2880] Two unit tests issues in 1.51b (t-coffee and mafft)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2880] Two unit tests issues in 1.51b (t-coffee and mafft)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2880] Two unit tests issues in 1.51b (t-coffee and mafft)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2880] Two unit tests issues in 1.51b (t-coffee and mafft)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2882] New: Unnamed variable used to raise Exception in /Bio/SwissProt/__init__.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2882] Unnamed variable used to raise Exception in /Bio/SwissProt/__init__.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2882] Unnamed variable used to raise Exception in /Bio/SwissProt/__init__.py   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2883] Errors after unpickling of 1.49 seqrecords   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2883] Errors after unpickling of 1.49 seqrecords   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2883] Errors after unpickling of 1.49 seqrecords   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2883] Errors after unpickling of 1.49 seqrecords   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2883] Errors after unpickling of 1.49 seqrecords   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2883] Errors after unpickling of 1.49 seqrecords   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2883] Errors after unpickling of 1.49 seqrecords   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2883] Errors after unpickling of 1.49 seqrecords   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2883] New: Errors after unpickling of 1.49 seqrecords   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2887] New: set iteration order dependency in Bio.Data.CodonTable   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2887] set iteration order dependency in Bio.Data.CodonTable   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2887] set iteration order dependency in Bio.Data.CodonTable   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2887] set iteration order dependency in Bio.Data.CodonTable   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2889] New: setup.py reads stdin even when stdin is not a terminal   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2889] setup.py reads stdin even when stdin is not a terminal   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2889] setup.py reads stdin even when stdin is not a terminal   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2889] setup.py reads stdin even when stdin is not a terminal   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2889] setup.py reads stdin even when stdin is not a terminal   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2889] setup.py reads stdin even when stdin is not a terminal   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2889] setup.py reads stdin even when stdin is not a terminal   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2890] Getting setup.py to work in Jython   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2890] Getting setup.py to work in Jython   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2890] Getting setup.py to work in Jython   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2890] Getting setup.py to work in Jython   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2890] New: Getting setup.py to work in Jython   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2891] Jython test_NCBITextParser fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2891] Jython test_NCBITextParser fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2891] Jython test_NCBITextParser fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2891] Jython test_NCBITextParser fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2891] New: Jython test_NCBITextParser fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2892] Jython MatrixInfo.py fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2892] Jython MatrixInfo.py fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2892] New: Jython MatrixInfo.py fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2893] Jython test_prosite fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2893] New: Jython test_prosite fix+patch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [emboss-dev] EMBOSS and its FASTA like alignment output   Peter
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Brad Chapman
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Brad Chapman
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Eric Talevich
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Peter
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Peter
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Nick Matzke
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Eric Talevich
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Eric Talevich
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Brad Chapman
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Brad Chapman
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Eric Talevich
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Peter
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Brad Chapman
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Peter
• [Biopython-dev] [Wg-phyloinformatics] BioGeography update   Nick Matzke
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 10: PhyloXML for Biopython   Brad Chapman
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 10: PhyloXML for Biopython   Christian Zmasek
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML for Biopython   Brad Chapman
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML for Biopython   Hilmar Lapp
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML for Biopython   Christian M Zmasek
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML for Biopython   Christian M Zmasek
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML for Biopython   Hilmar Lapp
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML for Biopython   Christian M Zmasek
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML for Biopython   Cymon Cox
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML for Biopython   Hilmar Lapp
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML forBiopython   Eric Talevich
• [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update 9: PhyloXML forBiopython   Peter
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Bartek Wilczynski
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Tiago Antão
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Brad Chapman
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Bartek Wilczynski
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Tiago Antão
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Brad Chapman
• [Biopython-dev] ApplicationResult and generic_run obsolete?   Peter
• [Biopython-dev] Arlequin sequence files in Bio.Popgen   Tiago Antão
• [Biopython-dev] Arlequin sequence files in Bio.Popgen   Tiago Antão
• [Biopython-dev] Arlequin sequence files in Bio.Popgen   David Winter
• [Biopython-dev] Bio.Nexus and internal node labels (Bug 2788)   Peter
• [Biopython-dev] Bio.Nexus and internal node labels (Bug 2788)   Nick Matzke
• [Biopython-dev] Bio.Nexus and internal node labels (Bug 2788)   Frank Kauff
• [Biopython-dev] Bio.Nexus and internal node labels (Bug 2788)   Peter
• [Biopython-dev] Bio.Nexus and internal node labels (Bug 2788)   Nick Matzke
• [Biopython-dev] Bio.SeqIO.convert function?   Peter
• [Biopython-dev] Bio.SeqIO.convert function?   Michiel de Hoon
• [Biopython-dev] Bio.SeqIO.convert function?   Peter
• [Biopython-dev] Bio.SeqIO.convert function?   Peter
• [Biopython-dev] Bio.SeqIO.convert function?   Peter
• [Biopython-dev] Bio.SeqIO.convert function?   Eric Talevich
• [Biopython-dev] Bio.SeqIO.convert function?   Peter
• [Biopython-dev] Bio.SeqIO.convert function?   Brad Chapman
• [Biopython-dev] Bio.SeqIO.convert function?   Peter
• [Biopython-dev] Bio.SubstMat (was: Re: Calculating motif scores)   Michiel de Hoon
• [Biopython-dev] Bio.SubstMat (was: Re: Calculating motif scores)   Iddo Friedberg
• [Biopython-dev] Bio.SubstMat (was: Re: Calculating motif scores)   Peter
• [Biopython-dev] Bio.SubstMat (was: Re: Calculating motif scores)   Peter
• [Biopython-dev] Bio.Tree layout (Was: BioGeography update)   Eric Talevich
• [Biopython-dev] Bio.Tree layout (Was: BioGeography update)   Brad Chapman
• [Biopython-dev] BioGeography update/BioPython tree module discussion   Nick Matzke
• [Biopython-dev] BioGeography update/BioPython tree module discussion   Eric Talevich
• [Biopython-dev] BioGeography update/BioPython tree module discussion   Nick Matzke
• [Biopython-dev] BioGeography update/BioPython tree module discussion   Hilmar Lapp
• [Biopython-dev] BioGeography update/BioPython tree module discussion   Brad Chapman
• [Biopython-dev] BioGeography update/BioPython tree module discussion   Nick Matzke
• [Biopython-dev] BioGeography update/BioPython tree module discussion   Nick Matzke
• [Biopython-dev] BioGeography update/BioPython tree module discussion   Brad Chapman
• [Biopython-dev] BioGeography update/BioPython tree module discussion   Eric Talevich
• [Biopython-dev] Biopython link on python.org wiki   Eric Talevich
• [Biopython-dev] Biopython link on python.org wiki   Peter
• [Biopython-dev] Calculating motif scores   Michiel de Hoon
• [Biopython-dev] Calculating motif scores   Bartek Wilczynski
• [Biopython-dev] Calculating motif scores   Michiel de Hoon
• [Biopython-dev] Calculating motif scores   Bartek Wilczynski
• [Biopython-dev] Calculating motif scores   Michiel de Hoon
• [Biopython-dev] EMBOSS format name "fastq-sanger" in Biopython?   Peter
• [Biopython-dev] EMBOSS format name "fastq-sanger" in Biopython?   Peter
• [Biopython-dev] EMBOSS format name "fastq-sanger" in Biopython?   Peter
• [Biopython-dev] EMBOSS format name "fastq-sanger" in Biopython?   Peter
• [Biopython-dev] FASTQ parsing speed in EMBOSS   Peter
• [Biopython-dev] FASTQ support in Biopython, BioPerl, and EMBOSS   Peter
• [Biopython-dev] FASTQ support in Biopython, BioPerl, and EMBOSS   Peter
• [Biopython-dev] FASTQ support in Biopython, BioPerl, and EMBOSS   Peter
• [Biopython-dev] GSoC code+documentation review: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] GSoC code+documentation review: PhyloXML for Biopython   Peter
• [Biopython-dev] GSoC code+documentation review: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] GSoC code+documentation review: PhyloXML for Biopython   Peter
• [Biopython-dev] GSoC code+documentation review: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] GSoC code+documentation review: PhyloXML for Biopython   Brad Chapman
• [Biopython-dev] GSoC code+documentation review: PhyloXML for Biopython   Peter
• [Biopython-dev] GSoC Weekly Update 10: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] GSoC Weekly Update 7: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] GSoC Weekly Update 8: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] GSoC Weekly Update 9: PhyloXML for Biopython   Eric Talevich
• [Biopython-dev] Handles and/or filenames in Bio.SeqIO etc?   Peter
• [Biopython-dev] Handles and/or filenames in Bio.SeqIO etc?   Brad Chapman
• [Biopython-dev] Line wrapping in FASTQ output   Peter
• [Biopython-dev] Line wrapping in FASTQ output   Peter Rice
• [Biopython-dev] Line wrapping in FASTQ output   Peter
• [Biopython-dev] Newick support in Bio.TreeIO?   Peter
• [Biopython-dev] Newick support in Bio.TreeIO?   Eric Talevich
• [Biopython-dev] Newick support in Bio.TreeIO?   Peter
• [Biopython-dev] Newick support in Bio.TreeIO?   Peter
• [Biopython-dev] Newick support in Bio.TreeIO?   Eric Talevich
• [Biopython-dev] Newick support in Bio.TreeIO?   Peter
• [Biopython-dev] Newick support in Bio.TreeIO?   Hilmar Lapp
• [Biopython-dev] Newick support in Bio.TreeIO?   Eric Talevich
• [Biopython-dev] Newick support in Bio.TreeIO?   Peter
• [Biopython-dev] Next release plans?   Peter
• [Biopython-dev] Next release plans?   Peter
• [Biopython-dev] Next release plans?   Peter
• [Biopython-dev] Next release plans?   Brad Chapman
• [Biopython-dev] Next release plans?   Peter
• [Biopython-dev] Next release plans?   Peter
• [Biopython-dev] Next release plans?   Peter Rice
• [Biopython-dev] Open-bio cross-project issues   Peter Rice
• [Biopython-dev] Phylip interface questions   Marshall Hampton
• [Biopython-dev] Phylip interface questions   Peter
• [Biopython-dev] Phylip interface questions   Marshall Hampton
• [Biopython-dev] Phylip interface questions   Peter
• [Biopython-dev] Phylip interface questions   Brad Chapman
• [Biopython-dev] Phylip interface questions   David Winter
• [Biopython-dev] Phylip interface questions   Peter
• [Biopython-dev] PhyloXML helper functions   Eric Talevich
• [Biopython-dev] PhyloXML helper functions   Brad Chapman
• [Biopython-dev] PhyloXML helper functions   Christian M Zmasek
• [Biopython-dev] PhyloXML helper functions   Eric Talevich
• [Biopython-dev] sff reader   Peter
• [Biopython-dev] sff reader   Peter

Last message date: Fri Jul 31 17:59:54 EDT 2009
Archived on: Fri Jul 31 17:59:57 EDT 2009

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