May 2009 Archives by thread

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Starting: Fri May 1 08:11:25 EDT 2009
Ending: Sat May 30 05:37:35 EDT 2009
Messages: 156

• [Biopython-dev] MUMmer   Brad Chapman
• [Biopython-dev] XML parsing library for new modules   Brad Chapman
  • [Biopython-dev] XML parsing library for new modules   Peter Cock
    • [Biopython-dev] XML parsing library for new modules   Michiel de Hoon
      • [Biopython-dev] XML parsing library for new modules   Peter Cock
      • [Biopython-dev] XML parsing library for new modules   Brad Chapman
• [Biopython-dev] [Bug 2820] Convert test_PDB.py to unittest   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] MUMmer   Marcin Swiatek
• [Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] MUMmer   Peter Cock
• [Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Properties in Bio.Application interface?   Peter
• [Biopython-dev] Properties names in command line wrappers   Peter
  • [Biopython-dev] Properties names in command line wrappers   Brad Chapman
    • [Biopython-dev] Properties names in command line wrappers   Peter
    • [Biopython-dev] Properties names in command line wrappers   Peter
      • [Biopython-dev] Properties names in command line wrappers   Cymon Cox
• [Biopython-dev] Switches in the Bio.Application interface   Peter
  • [Biopython-dev] Switches in the Bio.Application interface   Cymon Cox
    • [Biopython-dev] Switches in the Bio.Application interface   Peter
• [Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2294] Writing GenBank files with Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2294] Writing GenBank files with Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] SeqFeature and FeatureLocation objects (was Bio.GFF)   Peter Cock
  • [Biopython-dev] SeqFeature and FeatureLocation objects (was Bio.GFF)   Peter Cock
• [Biopython-dev] Dropping Python 2.3 support in Biopython   Peter Cock
• [Biopython-dev] Missing directories with easy_install?   Sebastian Bassi
  • [Biopython-dev] Missing directories with easy_install?   Peter
    • [Biopython-dev] Missing directories with easy_install?   Sebastian Bassi
• [Biopython-dev] SeqRecord per-letter-annotation : avoid lists?   Peter
• [Biopython-dev] [Bug 2820] Convert test_PDB.py to unittest   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2820] Convert test_PDB.py to unittest   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2824] New: Bio.Entrez.epost is using an HTTP GET not an HTTP POST   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2824] Bio.Entrez.epost is using an HTTP GET not an HTTP POST   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2824] Bio.Entrez.epost is using an HTTP GET not an HTTP POST   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2820] Convert test_PDB.py to unittest   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2817] Meta-bug for cleanup once we drop Python 2.3 support   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2825] New: SeqIO does not successfully parse Genbank records related to whole genome sequencing deposits, as Did not recognise the LOCUS line layout   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2825] Parsing whole genome sequencing (WGS) Genbank records   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2825] Parsing whole genome sequencing (WGS) Genbank records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2820] Convert test_PDB.py to unittest   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] PhyloXML read/parse functions and handles   Peter
  • [Biopython-dev] PhyloXML read/parse functions and handles   Eric Talevich
    • [Biopython-dev] PhyloXML read/parse functions and handles   Peter
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2820] Convert test_PDB.py to unittest   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2783] Using alternative start codons in Bio.Seq translate method/function   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2826] New: when creating a de-novo SeqRecord, the dbxrefs are not written by SeqIO.write   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2826] SeqRecord dbxrefs not written to GenBank by SeqIO   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2826] SeqRecord dbxrefs not written to GenBank by SeqIO   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2826] SeqRecord dbxrefs not written to GenBank by SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Clustal alignment format header line   Cymon Cox
  • [Biopython-dev] Clustal alignment format header line   Peter
    • [Biopython-dev] Clustal alignment format header line   Cymon Cox
      • [Biopython-dev] Clustal alignment format header line   Peter
• [Biopython-dev] Loading SeqRecords into BioSQL with NCBI taxon ID   Peter
• [Biopython-dev] history on github - where are the tags?   Peter
  • [Biopython-dev] history on github - where are the tags?   Bartek Wilczynski
    • [Biopython-dev] history on github - where are the tags?   Peter
      • [Biopython-dev] history on github - where are the tags?   Bartek Wilczynski
      • [Biopython-dev] history on github - where are the tags?   Peter
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Bio.EMBOSS wrappers   Peter
• [Biopython-dev] Properties names in command line wrappers   Peter
  • [Biopython-dev] Properties names in command line wrappers   Peter
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2815] Bio.Application command line interfaces   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Cookbook entry, concatenating nexus files   David Winter
  • [Biopython-dev] Cookbook entry, concatenating nexus files   Peter
    • [Biopython-dev] Cookbook entry, concatenating nexus files   Cymon Cox
      • [Biopython-dev] Cookbook entry, concatenating nexus files   Peter
      • [Biopython-dev] Cookbook entry, concatenating nexus files   Peter
      • [Biopython-dev] Cookbook entry, concatenating nexus files   David Winter
      • [Biopython-dev] Cookbook entry, concatenating nexus files   Peter
      • [Biopython-dev] Cookbook entry, concatenating nexus files   Cymon Cox
• [Biopython-dev] SwissProt DE lines and bioentry.description field in BioSQL   Peter
  • [Biopython-dev] SwissProt DE lines and bioentry.description field in BioSQL   Hilmar Lapp
    • [Biopython-dev] SwissProt DE lines and bioentry.description field in BioSQL   Peter
      • [Biopython-dev] SwissProt DE lines and bioentry.description field in BioSQL   Hilmar Lapp
• [Biopython-dev] [Bug 2829] New: Biosequence.alphabet can be set to unknown after loading a nucleotide SeqRecord   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2829] BioSQL does not record a generic nucleotide alphabet   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2829] BioSQL does not record a generic nucleotide alphabet   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2829] BioSQL does not record a generic nucleotide alphabet   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2829] BioSQL does not record a generic nucleotide alphabet   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [BioSQL-l] SwissProt DE lines and bioentry.description field in BioSQL   Peter
  • [Biopython-dev] [BioSQL-l] SwissProt DE lines and bioentry.description field in BioSQL   Hilmar Lapp
    • [Biopython-dev] [BioSQL-l] SwissProt DE lines and bioentry.description field in BioSQL   Peter
      • [Biopython-dev] SwissProt DE lines and bioentry.description field in BioSQL   Hilmar Lapp
      • [Biopython-dev] SwissProt DE lines and bioentry.description field in BioSQL   Peter
• [Biopython-dev] [Biopython] Parsing large blast files   Peter
• [Biopython-dev] Repeated options in command line interfaces   Peter
  • [Biopython-dev] Repeated options in command line interfaces   Brad Chapman
• [Biopython-dev] [Bug 2833] New: Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
    • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Cymon Cox
      • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Hilmar Lapp
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] RULES in BioSQL PostgreSQL schema   Peter
  • [Biopython-dev] RULES in BioSQL PostgreSQL schema   Hilmar Lapp
    • [Biopython-dev] RULES in BioSQL PostgreSQL schema   Peter
      • [Biopython-dev] RULES in BioSQL PostgreSQL schema   Hilmar Lapp
      • [Biopython-dev] RULES in BioSQL PostgreSQL schema   Peter
• [Biopython-dev] Peter at a conference next week   Peter
• [Biopython-dev] [Bug 2837] New: Reading Roche 454 SFF sequence read files in Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2837] Reading Roche 454 SFF sequence read files in Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2837] Reading Roche 454 SFF sequence read files in Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] sff reader   Peter
  • [Biopython-dev] sff reader   Brad Chapman
    • [Biopython-dev] sff reader   Peter
      • [Biopython-dev] sff reader   Senthil Palanisami
      • [Biopython-dev] sff reader   Peter
      • [Biopython-dev] sff reader   Senthil Palanisami
      • [Biopython-dev] sff reader   Peter
      • [Biopython-dev] sff reader   Senthil Palanisami
• [Biopython-dev] [Bug 2838] New: If a SeqRecord containing Genbank information is read from BioSQL, it cannot be written to another BioSQL database   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2838] If a SeqRecord containing Genbank information is read from BioSQL, it cannot be written to another BioSQL database   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2838] If a SeqRecord containing Genbank information is read from BioSQL, it cannot be written to another BioSQL database   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2838] If a SeqRecord containing Genbank information is read from BioSQL, it cannot be written to another BioSQL database   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2838] If a SeqRecord containing Genbank information is read from BioSQL, it cannot be written to another BioSQL database   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] SwissProt DE lines and bioentry.description field in BioSQL   Michiel de Hoon
  • [Biopython-dev] SwissProt DE lines and bioentry.description field in BioSQL   Peter
• [Biopython-dev] [Bug 2840] New: When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord fails in _load_reference   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2841] New: SeqFeature constructor ignores qualifiers and sub_features arguments   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] More SwissProt inconsistencies   Michiel de Hoon

Last message date: Sat May 30 05:37:35 EDT 2009
Archived on: Sat May 30 05:45:01 EDT 2009

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