[BioPython] plain txt blast output - xml instead
biopython at maubp.freeserve.co.uk
Thu Jun 15 14:38:54 EDT 2006
Michiel Jan Laurens de Hoon wrote:
> Peter wrote:
>>Looking at the raw XML file by hand, I could only see references to P1,
>>the first protein.
>>If the file had results for all four proteins I would expect to see:
>>... results for P1 ...
>>... results for P2 ...
>>... results for P3 ...
>>... results for P4 ...
> There are results for all four proteins in the XML file, but they look
> like this:
> and so on.
Oh yeah. I should have seen that, sorry.
According to the XML file, it is from BLASTP 2.2.14 [May-07-2006], maybe
they changed the XML format without telling anyone?
I couldn't see anything obvious on this page:
This looks like the source code here:
And you can view their CVS here:
There is nothing in the check-in comments that leaps out at me regarding
> Could you let us know how this XML file was generated?
e.g. Standalone or online?
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