[BioPython] AlignIO: Sequences of different length
anaryin at gmail.com
Fri Dec 5 08:59:25 EST 2008
Well... My VISTA partition just erased my Linux one, don't know how, so I
can't answer that right now :x As soon as I get linux again, as soon as I
get my script written again, I'll give an update here :) But I had solved
the problem by changing the alignment output format to markx10 and "parsing"
it my own way.
Cheers and thanks for the help :)
On Fri, Dec 5, 2008 at 12:18 PM, Peter <biopython at maubp.freeserve.co.uk>wrote:
> On Fri, Dec 5, 2008 at 11:34 AM, João Rodrigues <anaryin at gmail.com> wrote:
> > I got a reply from the EBI support team saying that the webserver they
> > provide is outdated, when compared to the versions of NEEDLE we (me on
> > web and Peter on his local machine) used. So, BioPython is nice and
> > up-to-date, it's their server that is quite outdated.
> > " Actually the WSEmboss web service uses an older version of EMBOSS
> > which exibits this behaviour. I suggest you contact the BioPython folks
> and let
> > them know that older versions of EMBOSS behave differently.
> > If you want to use the latest version of EMBOSS I suggest looking at
> > the Soaplab services (see
> > instead.
> > All the best,
> > Support at EBI"
> > João Rodrigues
> Thanks the update :)
> Are you OK using the more up to date SOAP needle, or perhaps standalone
> Does thos
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