List of applications executed via Biopython

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(Python libraries: Added networkx)
(Applications: Listed binaries for Phylo and PDB, with links. (Academic NACCESS URL is currently down.))
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===Applications===
 
===Applications===
  
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Bio.Phylo:
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* [http://www.microbesonline.org/fasttree/ FastTree]
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* [http://www.atgc-montpellier.fr/phyml/ PhyML]
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* [http://sco.h-its.org/exelixis/web/software/raxml/index.html RAxML]
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* [http://abacus.gene.ucl.ac.uk/software/ PAML] (baseml, codeml, yn00)
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Bio.PDB:
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* [http://swift.cmbi.ru.nl/gv/dssp/ DSSP]
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* [http://www.e-lucid.com/i/software/bioinformatics/naccess.html NACCESS]
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* [ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/ PSEA]
  
 
''I am not particularly fond of the title of this page (tiago), if you have a better one, please correct''
 
''I am not particularly fond of the title of this page (tiago), if you have a better one, please correct''

Revision as of 18:29, 8 December 2013

(under construction)

Python libraries

NumPy

Matplotib

RDFLib (epydoc is requesting this)

NetworkX

Applications

Bio.Phylo:

Bio.PDB:

I am not particularly fond of the title of this page (tiago), if you have a better one, please correct

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