Participants

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Note: People are listed here alphabetically by surname.
 
Note: People are listed here alphabetically by surname.
 +
This is only a partial listing, see also the [http://biopython.org/SRC/biopython/CONTRIB contributor listing] in the Biopython source code.
  
{| border="1" width="100%"
+
= Sebastian Bassi =
| Name                    || Sebastian Bassi
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail           || [mailto:sbassi@genesdigitales.com sbassi@genesdigitales.com]
 
| E-mail           || [mailto:sbassi@genesdigitales.com sbassi@genesdigitales.com]
 +
 
|-
 
|-
 +
 
| Affiliation           || Universidad Nacional de Quilmes
 
| Affiliation           || Universidad Nacional de Quilmes
 +
 
|-
 
|-
 +
 
| Location           || Balcarce, Buenos Aires, Argentina
 
| Location           || Balcarce, Buenos Aires, Argentina
 +
 
|-
 
|-
 +
 
| Uses Python for        || Bioinformatics and data manipulation
 
| Uses Python for        || Bioinformatics and data manipulation
 +
 
|-
 
|-
 +
 
| Work/Research Interests || IT Manager Advanta Seeds in Balcarce Research Station
 
| Work/Research Interests || IT Manager Advanta Seeds in Balcarce Research Station
 +
 
|-
 
|-
 +
 
| Biopython Contributions || LCC and primer Tm calculation function
 
| Biopython Contributions || LCC and primer Tm calculation function
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://www.bioinformatica.info
 
| Relevant URL            || http://www.bioinformatica.info
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Jeffrey Chang =
| Name                    || Jeffrey Chang
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || [mailto:jchang@smi.stanford.edu jchang@smi.stanford.edu]
 
| E-mail                  || [mailto:jchang@smi.stanford.edu jchang@smi.stanford.edu]
 +
 
|-
 
|-
 +
 
| Affiliation            || Postdoctoral Fellow, Duke University
 
| Affiliation            || Postdoctoral Fellow, Duke University
 +
 
|-
 
|-
 +
 
| Location                || Durham, NC
 
| Location                || Durham, NC
 +
 
|-
 
|-
 +
 
| Uses Python for        || Eating spam
 
| Uses Python for        || Eating spam
 +
 
|-
 
|-
 +
 
| Work/Research Interests || Bioinformatics
 
| Work/Research Interests || Bioinformatics
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Co-Founder
 
| Biopython Contributions || Co-Founder
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://www.jeffchang.com/
 
| Relevant URL            || http://www.jeffchang.com/
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Brad Chapman =
| Name                    || Brad Chapman
+
{| border="0"
 
|-
 
|-
 +
 
| Affiliation            || Massachusetts General Hospital
 
| Affiliation            || Massachusetts General Hospital
 +
 
|-
 
|-
 +
 
| Location                || Boston, MA
 
| Location                || Boston, MA
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Docs, GenBank, [[BioSQL]]
 
| Biopython Contributions || Docs, GenBank, [[BioSQL]]
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://bcbio.wordpress.com/
 
| Relevant URL            || http://bcbio.wordpress.com/
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= [[User:Peter|Peter Cock]] =
| Name                    || [[User:Peter|Peter Cock]]
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || See my web page
 
| E-mail                  || See my web page
 +
 
|-
 
|-
 +
 
| Affiliation            || Plant Pathology, SCRI; previously MOAC Doctoral Training Centre, University of Warwick
 
| Affiliation            || Plant Pathology, SCRI; previously MOAC Doctoral Training Centre, University of Warwick
 +
 
|-
 
|-
 +
 
| Location                || Dundee, Scotland, UK
 
| Location                || Dundee, Scotland, UK
 +
 
|-
 
|-
 +
 
| Uses Python for        || Bioinformatics, controlling R with rpy, ...
 
| Uses Python for        || Bioinformatics, controlling R with rpy, ...
 +
 
|-
 
|-
 +
 
| Work/Research Interests || Bacterial signalling, genomics
 
| Work/Research Interests || Bacterial signalling, genomics
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Sequence parsing including [[SeqIO|Bio.SeqIO]], [[AlignIO|Bio.AlignIO]], our [[BioSQL|BioSQL interface]], and documentation
 
| Biopython Contributions || Sequence parsing including [[SeqIO|Bio.SeqIO]], [[AlignIO|Bio.AlignIO]], our [[BioSQL|BioSQL interface]], and documentation
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://www.scri.ac.uk/staff/petercock and http://www.warwick.ac.uk/go/peter_cock/python/
 
| Relevant URL            || http://www.scri.ac.uk/staff/petercock and http://www.warwick.ac.uk/go/peter_cock/python/
 +
 
|-
 
|-
 +
 
| github || http://github.com/peterjc
 
| github || http://github.com/peterjc
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Andrew Dalke =
| Name                    || Andrew Dalke
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || [mailto:dalke@dalkescientific.com dalke@dalkescientific.com]
 
| E-mail                  || [mailto:dalke@dalkescientific.com dalke@dalkescientific.com]
 +
 
|-
 
|-
 +
 
| Affiliation            || Dalke Scientific Software, LLC
 
| Affiliation            || Dalke Scientific Software, LLC
 +
 
|-
 
|-
 +
 
| Location                || Santa Fe, NM
 
| Location                || Santa Fe, NM
 +
 
|-
 
|-
 +
 
| Uses Python for        || Just about anything
 
| Uses Python for        || Just about anything
 +
 
|-
 
|-
 +
 
| Work/Research Interests || Large-scale usable systems for scientists
 
| Work/Research Interests || Large-scale usable systems for scientists
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Co-Founder, Seq, Martel, indexing, EUtils, patterns, parsing, ...
 
| Biopython Contributions || Co-Founder, Seq, Martel, indexing, EUtils, patterns, parsing, ...
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://www.dalkescientific.com/
 
| Relevant URL            || http://www.dalkescientific.com/
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= [[User:Mdehoon|Michiel de Hoon]] =
| Name                    || [[User:Mdehoon|Michiel de Hoon]]
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || See my web page
 
| E-mail                  || See my web page
 +
 
|-
 
|-
 +
 
| Affiliation            || RIKEN Omics Science Center
 
| Affiliation            || RIKEN Omics Science Center
 +
 
|-
 
|-
 +
 
| Location                || Yokohama
 
| Location                || Yokohama
 +
 
|-
 
|-
 +
 
| Uses Python for        || High-throughput data analysis & Scientific visualization
 
| Uses Python for        || High-throughput data analysis & Scientific visualization
 +
 
|-
 
|-
 +
 
| Work/Research Interests || RNA Genomics
 
| Work/Research Interests || RNA Genomics
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Bio.Cluster; Bio.Entrez; Windows installer
 
| Biopython Contributions || Bio.Cluster; Bio.Entrez; Windows installer
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://bonsai.ims.u-tokyo.ac.jp/~mdehoon
 
| Relevant URL            || http://bonsai.ims.u-tokyo.ac.jp/~mdehoon
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Iddo Friedberg =
| Name                    || Iddo Friedberg
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || idoerg "at" burnham.org
 
| E-mail                  || idoerg "at" burnham.org
 +
 
|-
 
|-
 +
 
| Affiliation            || The Burnham Institute
 
| Affiliation            || The Burnham Institute
 +
 
|-
 
|-
 +
 
| Location                || La-Jolla, CA, USA
 
| Location                || La-Jolla, CA, USA
 +
 
|-
 
|-
 +
 
| Uses Python for        || Maintaining World Domination
 
| Uses Python for        || Maintaining World Domination
 +
 
|-
 
|-
 +
 
| Work/Research Interests || Structural Bioinformatics
 
| Work/Research Interests || Structural Bioinformatics
 +
 
|-
 
|-
 +
 
| Biopython Contributions || SubsMat, FSSP, bits of Align, bits of the Manual, and a lot of silly questions to the lists
 
| Biopython Contributions || SubsMat, FSSP, bits of Align, bits of the Manual, and a lot of silly questions to the lists
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://iddo-friedberg.org
 
| Relevant URL            || http://iddo-friedberg.org
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Christian Gunning =
| Name                    || Christian Gunning
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || bioboy at uga dot edu
 
| E-mail                  || bioboy at uga dot edu
 +
 
|-
 
|-
 +
 
| Affiliation            || human, mountain
 
| Affiliation            || human, mountain
 +
 
|-
 
|-
 +
 
| Location                || Athens, GA
 
| Location                || Athens, GA
 +
 
|-
 
|-
 +
 
| Uses Python for        || strings, as glue; also on laundry and dirty dishes
 
| Uses Python for        || strings, as glue; also on laundry and dirty dishes
 +
 
|-
 
|-
 +
 
| Work/Research Interests || arabidopsis; Biological Sequence Analysis, Durbin et al.; Primer3; www.swig.org; R programming language and rpy.sourceforge.net
 
| Work/Research Interests || arabidopsis; Biological Sequence Analysis, Durbin et al.; Primer3; www.swig.org; R programming language and rpy.sourceforge.net
 +
 
|-
 
|-
 +
 
| Biopython Contributions ||
 
| Biopython Contributions ||
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://www.botany.uga.edu/courses/bioinformatics/current/index.html
 
| Relevant URL            || http://www.botany.uga.edu/courses/bioinformatics/current/index.html
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Thomas Hamelryck =
| Name                    || Thomas Hamelryck
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || thamelry - binf ku dk
 
| E-mail                  || thamelry - binf ku dk
 +
 
|-
 
|-
 +
 
| Affiliation            || University of Copenhagen
 
| Affiliation            || University of Copenhagen
 +
 
|-
 
|-
 +
 
| Location                || Copenhagen, Denmark
 
| Location                || Copenhagen, Denmark
 +
 
|-
 
|-
 +
 
| Uses Python for        || Annoying FORTRAN programmers
 
| Uses Python for        || Annoying FORTRAN programmers
 +
 
|-
 
|-
 +
 
| Work/Research Interests || Structural bioinformatics
 
| Work/Research Interests || Structural bioinformatics
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Bio.PDB, KDTree, SVDSuperimposer
 
| Biopython Contributions || Bio.PDB, KDTree, SVDSuperimposer
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://www.binf.ku.dk/users/thamelry
 
| Relevant URL            || http://www.binf.ku.dk/users/thamelry
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Michael Hoffman =
| Name                    || Michael Hoffman
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || grouse at alumni period utexas period net
 
| E-mail                  || grouse at alumni period utexas period net
 +
 
|-
 
|-
 +
 
| Affiliation            || The University of Texas at Austin
 
| Affiliation            || The University of Texas at Austin
 +
 
|-
 
|-
 +
 
| Location                || Austin, TX, USA
 
| Location                || Austin, TX, USA
 +
 
|-
 
|-
 +
 
| Uses Python for        || Biopython!
 
| Uses Python for        || Biopython!
 +
 
|-
 
|-
 +
 
| Work/Research Interests || RNA, Genome annotations
 
| Work/Research Interests || RNA, Genome annotations
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Bio.GFF, Bio.DocSQL
 
| Biopython Contributions || Bio.GFF, Bio.DocSQL
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://spice.cc.utexas.edu/~grouse/
 
| Relevant URL            || http://spice.cc.utexas.edu/~grouse/
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Frank Kauff =
| Name                    || Frank Kauff
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || fkauff at biologie uni-kl de
 
| E-mail                  || fkauff at biologie uni-kl de
 +
 
|-
 
|-
 +
 
| Affiliation            || University of Kaiserslautern
 
| Affiliation            || University of Kaiserslautern
 +
 
|-
 
|-
 +
 
| Location                || Kaiserslautern, Germany
 
| Location                || Kaiserslautern, Germany
 +
 
|-
 
|-
 +
 
| Uses Python for        || Phylogenetics and everything else
 
| Uses Python for        || Phylogenetics and everything else
 +
 
|-
 
|-
 +
 
| Work/Research Interests || Phylogenetics and all that's related, Fungi, Lichens, Cyanobacteria
 
| Work/Research Interests || Phylogenetics and all that's related, Fungi, Lichens, Cyanobacteria
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Phd, Ace, Nexus (mostly with C. Cox)
 
| Biopython Contributions || Phd, Ace, Nexus (mostly with C. Cox)
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://www.uni-kl.de/wcms/ag-kauff.html
 
| Relevant URL            || http://www.uni-kl.de/wcms/ag-kauff.html
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= [[User:Gotgenes|Chris Lasher]] =
| Name                    || [[User:Gotgenes|Chris Lasher]]
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || [mailto:chris.lasher@gmail.com chris.lasher@gmail.com]
 
| E-mail                  || [mailto:chris.lasher@gmail.com chris.lasher@gmail.com]
 +
 
|-
 
|-
 +
 
| Affiliation            || [https://www.vbi.vt.edu/ Virginia Bioinformatics Institute]
 
| Affiliation            || [https://www.vbi.vt.edu/ Virginia Bioinformatics Institute]
 +
 
|-
 
|-
 +
 
| Location                || Blacksburg, VA
 
| Location                || Blacksburg, VA
 +
 
|-
 
|-
 +
 
| Uses Python for        || Putting the joy back in programming
 
| Uses Python for        || Putting the joy back in programming
 +
 
|-
 
|-
 +
 
| Work/Research Interests || Bacterial genomics
 
| Work/Research Interests || Bacterial genomics
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Subversion migration
 
| Biopython Contributions || Subversion migration
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://gotgenes.com/
 
| Relevant URL            || http://gotgenes.com/
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Bartek Wilczyński =
| Name                    || Bartek Wilczyński
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || bartek_AT_rezolwenta.eu.org
 
| E-mail                  || bartek_AT_rezolwenta.eu.org
 +
 
|-
 
|-
 +
 
| Affiliation            || Institute of Mathematics, Polish Academy of Science
 
| Affiliation            || Institute of Mathematics, Polish Academy of Science
 +
 
|-
 
|-
 +
 
| Location                || Warsaw, Poland
 
| Location                || Warsaw, Poland
 +
 
|-
 
|-
 +
 
| Uses Python for        || most of his computations
 
| Uses Python for        || most of his computations
 +
 
|-
 
|-
 +
 
| Work/Research Interests || mathematical models of gene regulation
 
| Work/Research Interests || mathematical models of gene regulation
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Bio.AlignAce
 
| Biopython Contributions || Bio.AlignAce
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://bartek.rezolwenta.eu.org
 
| Relevant URL            || http://bartek.rezolwenta.eu.org
 +
 
|}
 
|}
  
  
{| border="1" width="100%"
+
= Harry Zuzan =
| Name                    || Harry Zuzan
+
{| border="0"
 
|-
 
|-
 +
 
| E-mail                  || [mailto:iliketobicycle@yahoo.ca iliketobicycle@yahoo.ca]
 
| E-mail                  || [mailto:iliketobicycle@yahoo.ca iliketobicycle@yahoo.ca]
 +
 
|-
 
|-
 +
 
| Affiliation            || Genome Quebec
 
| Affiliation            || Genome Quebec
 +
 
|-
 
|-
 +
 
| Location                || Montreal
 
| Location                || Montreal
 +
 
|-
 
|-
 +
 
| Uses Python for        || you name it
 
| Uses Python for        || you name it
 +
 
|-  
 
|-  
 +
 
| Work/Research Interests || Statistics applied to molecular biology and genetics
 
| Work/Research Interests || Statistics applied to molecular biology and genetics
 +
 
|-
 
|-
 +
 
| Biopython Contributions || Affy package for Affymetrix data
 
| Biopython Contributions || Affy package for Affymetrix data
 +
 
|-
 
|-
 +
 
| Relevant URL            || http://www.oligopython.org
 
| Relevant URL            || http://www.oligopython.org
 +
 
|}
 
|}

Revision as of 16:37, 17 March 2009

Note: People are listed here alphabetically by surname. This is only a partial listing, see also the contributor listing in the Biopython source code.

Contents

Sebastian Bassi

E-mail sbassi@genesdigitales.com
Affiliation Universidad Nacional de Quilmes
Location Balcarce, Buenos Aires, Argentina
Uses Python for Bioinformatics and data manipulation
Work/Research Interests IT Manager Advanta Seeds in Balcarce Research Station
Biopython Contributions LCC and primer Tm calculation function
Relevant URL http://www.bioinformatica.info


Jeffrey Chang

E-mail jchang@smi.stanford.edu
Affiliation Postdoctoral Fellow, Duke University
Location Durham, NC
Uses Python for Eating spam
Work/Research Interests Bioinformatics
Biopython Contributions Co-Founder
Relevant URL http://www.jeffchang.com/


Brad Chapman

Affiliation Massachusetts General Hospital
Location Boston, MA
Biopython Contributions Docs, GenBank, BioSQL
Relevant URL http://bcbio.wordpress.com/


Peter Cock

E-mail See my web page
Affiliation Plant Pathology, SCRI; previously MOAC Doctoral Training Centre, University of Warwick
Location Dundee, Scotland, UK
Uses Python for Bioinformatics, controlling R with rpy, ...
Work/Research Interests Bacterial signalling, genomics
Biopython Contributions Sequence parsing including Bio.SeqIO, Bio.AlignIO, our BioSQL interface, and documentation
Relevant URL http://www.scri.ac.uk/staff/petercock and http://www.warwick.ac.uk/go/peter_cock/python/
github http://github.com/peterjc


Andrew Dalke

E-mail dalke@dalkescientific.com
Affiliation Dalke Scientific Software, LLC
Location Santa Fe, NM
Uses Python for Just about anything
Work/Research Interests Large-scale usable systems for scientists
Biopython Contributions Co-Founder, Seq, Martel, indexing, EUtils, patterns, parsing, ...
Relevant URL http://www.dalkescientific.com/


Michiel de Hoon

E-mail See my web page
Affiliation RIKEN Omics Science Center
Location Yokohama
Uses Python for High-throughput data analysis & Scientific visualization
Work/Research Interests RNA Genomics
Biopython Contributions Bio.Cluster; Bio.Entrez; Windows installer
Relevant URL http://bonsai.ims.u-tokyo.ac.jp/~mdehoon


Iddo Friedberg

E-mail idoerg "at" burnham.org
Affiliation The Burnham Institute
Location La-Jolla, CA, USA
Uses Python for Maintaining World Domination
Work/Research Interests Structural Bioinformatics
Biopython Contributions SubsMat, FSSP, bits of Align, bits of the Manual, and a lot of silly questions to the lists
Relevant URL http://iddo-friedberg.org


Christian Gunning

E-mail bioboy at uga dot edu
Affiliation human, mountain
Location Athens, GA
Uses Python for strings, as glue; also on laundry and dirty dishes
Work/Research Interests arabidopsis; Biological Sequence Analysis, Durbin et al.; Primer3; www.swig.org; R programming language and rpy.sourceforge.net
Biopython Contributions
Relevant URL http://www.botany.uga.edu/courses/bioinformatics/current/index.html


Thomas Hamelryck

E-mail thamelry - binf ku dk
Affiliation University of Copenhagen
Location Copenhagen, Denmark
Uses Python for Annoying FORTRAN programmers
Work/Research Interests Structural bioinformatics
Biopython Contributions Bio.PDB, KDTree, SVDSuperimposer
Relevant URL http://www.binf.ku.dk/users/thamelry


Michael Hoffman

E-mail grouse at alumni period utexas period net
Affiliation The University of Texas at Austin
Location Austin, TX, USA
Uses Python for Biopython!
Work/Research Interests RNA, Genome annotations
Biopython Contributions Bio.GFF, Bio.DocSQL
Relevant URL http://spice.cc.utexas.edu/~grouse/


Frank Kauff

E-mail fkauff at biologie uni-kl de
Affiliation University of Kaiserslautern
Location Kaiserslautern, Germany
Uses Python for Phylogenetics and everything else
Work/Research Interests Phylogenetics and all that's related, Fungi, Lichens, Cyanobacteria
Biopython Contributions Phd, Ace, Nexus (mostly with C. Cox)
Relevant URL http://www.uni-kl.de/wcms/ag-kauff.html


Chris Lasher

E-mail chris.lasher@gmail.com
Affiliation Virginia Bioinformatics Institute
Location Blacksburg, VA
Uses Python for Putting the joy back in programming
Work/Research Interests Bacterial genomics
Biopython Contributions Subversion migration
Relevant URL http://gotgenes.com/


Bartek Wilczyński

E-mail bartek_AT_rezolwenta.eu.org
Affiliation Institute of Mathematics, Polish Academy of Science
Location Warsaw, Poland
Uses Python for most of his computations
Work/Research Interests mathematical models of gene regulation
Biopython Contributions Bio.AlignAce
Relevant URL http://bartek.rezolwenta.eu.org


Harry Zuzan

E-mail iliketobicycle@yahoo.ca
Affiliation Genome Quebec
Location Montreal
Uses Python for you name it
Work/Research Interests Statistics applied to molecular biology and genetics
Biopython Contributions Affy package for Affymetrix data
Relevant URL http://www.oligopython.org
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