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Latest revision as of 12:52, 24 September 2009

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Core commits

Run part of test_Phylo_depend.py if NetworkX missing
For Python 3, recommend Python 3.3.2 or later
Thank Kai for GenBank parsing work
Fix minor typo in exception
SeqIO: Better cope with wrong LOCUS line spacing in GenBank
Using // for explicit integer division, don't need import
Phylo.draw_ascii: use floor division (Py3 compatibility)
Adding test case from Kai Blin; Fixed some warnings.
Assume stranded features for bad LOCUS link GenBank files.
Fix doctest which was blocking 2to3 and preventing installation on Python 3
Add the new Bio.motifs.jaspar package to the list of packages to install
fixed a few typos
Expanded jaspar module contributed by Anthony Mathelier and David Arenillas of UBC
Must install the new Bio.UniProt module
New module Bio.UniProt in NEWS file
code for dealign with assorted UniProt file formats; contributed by Iddo Friedberg.
Merge pull request #184 from luizirber/master
Fix Bio.ExPASy.ScanProsite.read in Python 3.
Also skip test_PopGen_DFDist.py if on old Python 3
Added the capability to set the number of pseudocounts equal to the square root of the number of instances

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-| <rss>http://biopython.open-bio.org/CVS2RSS/biopython.rss|date|max=20</rss>
+| <rss>http://github.com/feeds/biopython/commits/biopython/master|date|max=20</rss>
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