User contributions
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- 21:48, 12 April 2013 (diff | hist) Google Summer of Code (→2013: Link to NESCent's GSoC page) (top)
- 21:44, 12 April 2013 (diff | hist) Google Summer of Code (→Introduction: OBF wasn't selected this year. Generally refer to OBF and NESCent as past mentoring orgs.)
- 15:32, 27 March 2013 (diff | hist) Google Summer of Code (→2013: Added links and a little text)
- 15:19, 27 March 2013 (diff | hist) Google Summer of Code (→Bio.Phylo: filling in the gaps: Italicized book title properly; co-mentors welcome)
- 15:16, 27 March 2013 (diff | hist) Google Summer of Code (→Codon alignment and analysis: Add Peter as possible co-mentor, mention Z. Yang's CME book)
- 17:53, 21 March 2013 (diff | hist) Active projects (→Porting Biopython documentation to Sphinx: pretty links) (top)
- 17:51, 21 March 2013 (diff | hist) Active projects (→Current projects: Added Sphinx, removed Phylo, updated PDB)
- 17:26, 21 March 2013 (diff | hist) Google Summer of Code (→Codon alignment and analysis: Added model selection as a goal, per Peter.)
- 17:18, 21 March 2013 (diff | hist) Google Summer of Code (→Bio.Phylo: filling in the gaps: Tree viz)
- 17:13, 21 March 2013 (diff | hist) Google Summer of Code (Added 2013 project: Bio.Phylo enhancements)
- 16:43, 21 March 2013 (diff | hist) Google Summer of Code (Added 2013 project: codon alignments)
- 05:17, 15 February 2013 (diff | hist) Active projects (→Phylo: NeXML is supported now, no longer "active")
- 17:57, 23 August 2012 (diff | hist) Documentation (→Papers: added the new Bio.Phylo paper)
- 14:40, 2 March 2012 (diff | hist) Google Summer of Code (→Variant representation, parser, generator, and coordinate converter (DRAFT): Added James Casbon as a co-mentor)
- 18:41, 10 February 2012 (diff | hist) Google Summer of Code (2011 projects to past tense)
- 18:17, 3 January 2012 (diff | hist) Phylo cookbook (Undo revision 3679 by EricTalevich (Talk) -- code doesn't work)
- 17:57, 3 January 2012 (diff | hist) Phylo cookbook (function: make a tree hypermetric)
- 21:46, 21 November 2011 (diff | hist) Participants (→Eric Talevich: tweaks)
- 21:34, 21 November 2011 (diff | hist) Participants (Added myself)
- 05:13, 26 August 2011 (diff | hist) Phylo (→Example pipeline: Fixed file names) (top)
- 05:05, 26 August 2011 (diff | hist) Phylo (→Example pipeline: Use Muscle and PhyML in place of ClustalW, etc.)
- 04:26, 26 August 2011 (diff | hist) Phylo (→Utilities: Moved "Exporting" to the bottom and added a link to the Phylo cookbook page)
- 04:17, 26 August 2011 (diff | hist) Phylo (→Displaying trees: The figure was ladderized)
- 04:14, 26 August 2011 (diff | hist) Phylo (→Example pipeline: Stub with links to PhyML (external) and PAML (here))
- 04:06, 26 August 2011 (diff | hist) N File:Phylo-draw-apaf1.png (top)
- 04:05, 26 August 2011 (diff | hist) Phylo (→Displaying trees: Mentioned Phylo.draw)
- 21:45, 13 June 2011 (diff | hist) Google Summer of Code (Added the 2011 students' projects and linked to their pages)
- 22:09, 4 May 2011 (diff | hist) Phylo cookbook (→Convert to an 'ape' tree, via Rpy2: always remember to flush() ...)
- 22:02, 4 May 2011 (diff | hist) Phylo cookbook (→Convert to an 'ape' tree, via Rpy2: missing parens)
- 21:50, 4 May 2011 (diff | hist) Phylo cookbook (→Exporting to other types: Added to_ape)
- 18:31, 26 March 2011 (diff | hist) Phylo (Rephrased the intro.)
- 19:59, 18 March 2011 (diff | hist) Google Summer of Code (Updated the intro -- OBF was accepted for 2011)
- 20:17, 7 March 2011 (diff | hist) Google Summer of Code (→Integration with a third-party structural biology application: Removed -- Joao's work makes this less important)
- 20:14, 7 March 2011 (diff | hist) Google Summer of Code (→PDB-Tidy: command-line tools for manipulating PDB files: Removed -- it was done last year)
- 23:00, 17 November 2010 (diff | hist) Phylo cookbook (→Consensus methods: reminder: strict consensus)
- 22:59, 17 November 2010 (diff | hist) Phylo cookbook (→Comparing trees: reminder: robinson-foulds for treedist)
- 19:21, 31 October 2010 (diff | hist) Phylo cookbook (→Convenience functions: Getting the parent of a clade)
- 21:45, 10 October 2010 (diff | hist) Phylo (→read(): example of parsing a string via StringIO)
- 21:12, 3 October 2010 (diff | hist) Phylo cookbook (→Rooting methods: Describe root_with_outgroup)
- 16:25, 26 June 2010 (diff | hist) Phylo cookbook (→Convert to a NumPy array or matrix: touchup)
- 16:17, 26 June 2010 (diff | hist) Phylo cookbook (→Convert to a NumPy array or matrix: Added implementations for adjacency and distance matrix)
- 15:28, 26 June 2010 (diff | hist) Phylo (Added links to the cookbook and PhyloXML pages in the intro)
- 15:13, 26 June 2010 (diff | hist) Phylo cookbook (→Convenience functions: Added two functions suggested by Joel Berendzen on Bugzilla)
- 04:14, 26 June 2010 (diff | hist) Phylo cookbook (Convenience functions: index clades by name)
- 02:39, 26 June 2010 (diff | hist) Phylo cookbook (→Comparing trees: techniques mentioned in Inferring Phylogenies (Felsenstein 2004))
- 02:36, 26 June 2010 (diff | hist) Phylo cookbook (→Consensus methods: Pub links for the latter two)
- 02:30, 26 June 2010 (diff | hist) Phylo cookbook (→Consensus methods: two more method ideas)
- 16:09, 25 June 2010 (diff | hist) Phylo (→Displaying trees: Linked to the Phylo cookbook page)
- 16:07, 25 June 2010 (diff | hist) Phylo cookbook (Linked to the main Phylo page)
- 16:04, 25 June 2010 (diff | hist) Phylo cookbook (Added a Graphics section)
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